Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015838709.1_cds_XP_016507057.1_20219
CDS Infomation

[gene=LOC107824757] [db_xref=GeneID:107824757] [protein=probable NOT transcription complex subunit VIP2 isoform X2] [protein_id=XP_016507057.1] [location=join(13456..13584,13912..14293,15138..15344,15435..15530,16261..16349,16460..16645,17507..17929,18007..18059,18142..18183,18377..18521,18640..18699)] [gbkey=CDS]
Sequence

ATGCATGGAACACTTGGTTCAAGAAACACAGCAATAAATAACGTCCCCTCCAGTGGTGTC
CAGCAATCTGGGAATAATCTTTCTGGTGGTCGTTTTGTACCAAACAATCTTCCCACTGCC
CTTTCTCAGATATCCCAAGGCAATTCGCATGCTCATTCTGGGATGACGAGTAGAGGTGGT
ATGAGTGTTGTTGGTAACCCGGGATATAGCAGTAACACTAATGGTGTAGGGGGTTCTATC
CCTGGAATTCTCCCAACCTCTGCAGCAATTGGTAATCGAAGTTCTGTGCCAGGCCTTGGG
GTGTCCCCCATTTTGGGAAATGCAGGCCCAAGGATGACAAACTCAGTTGGAAATATAGTT
GGTGGGGGCAACATTGGCAGAAGCATTAGCTCTGGTGCAGGATTGTCTGTGCCTGGTCTT
GCTTCACGGCTAAATATGAACACCAACTCTGGCTCTGGAAATTTAAATGTTCAAGGACCT
AATAGGCTAATGAGTGGTGTTCTTCAGCAAGCCTCTCCGCAGGTTCTTTCTATGTTAGGG
AACTCCTACCCTGCTGGTGGCCCACTGTCTCAAAACCACGTCCAAGCAATTGGCAATTTT
AACTCTATGGGATTGTTGAATGACGTAAATTCAAATGATGGATCTCCTTTTGATATCAAT
GATTTCCCTCAGCTAAGCAGCCGGCCCAGTTCGGCTGGAGGACCTCAAGGACAATTGGGT
TCCTTACGGAAGCAAGGGCTCAGTCCTATTGTTCAACAAAATCAGGAATTCAGCATTCAA
AATGAAGATTTTCCTGCTTTACCTGGATTTAAAGGTGGGAATGCTGATTATGCTATGGAT
CCTCACCAGAAAGAGCAACTCCATGATAATACTCTTTCGATGATGCAGCAACAACACTTC
TCAATGGGAAGATCTGCTGGTTTTAACTTGGGGGGAACATACTCATCGAATCGTCCACTG
CAGCAGCTGCAACATGCTCCATCTGTTAGTAGTAGTGGTGTCTCCTTTTCAAATATAAAT
AACCAGGATCTGCTGAGTTTACATGGTTCAGATGCCTTCCAATCATCGCGCTCCAGTTAC
CAGCAACAGGGTGGTGGACCTCCTGGTATTGGGTTACGACCTCTTAACTCTTCAGGTACT
GTTTCTGGGATTGGATCATATGATCAGCTTATCCAGCAGTACCAACAGCATCAGGGTCAA
TCCCAATTTCGGTTGCAGCAAATGTCCACTTTAGGTCAGCCATTCAAAGATCAGAGCTTA
AAGTCCATGCAATCCCAAGTTGCTCCTGACCCGTTTGGTATGCTTGGTTTGCTAAGTGTA
ATACGGATGAGCGATCCGGATTTGACTTCTCTTGCACTTGGAATTGATCTAACAACACTT
GGATTAAATTTGAACTCTGCTGAAAATTTGTACAAGACATTTGGTTCCCCATGGTCTGAT
GAGCCTGCTAAGGGGGATCCAGAGTTTACAGTACCCCAATGTTATTATGCGAAGCAACCG
CCACCTTTAAATCAAGCGTACTTCTCAAAGTTTCAGCTAGATACTTTGTTCTACATTTTT
TACAGCATGCCAAAAGATGAAGCACAGCTATATGCTGCAAATGAACTGTACAACCGCGGC
TGGTTCTATCACAGAGAACATCGGTTGTGGTTTATGCGGGTTGCCAACATGGAGCCTCTC
GTCAAGACGAATGCATATGAGAGAGGGTCTTACATTTGTTTTGATCCAAACACATGGGAG
ACGATCCGCAAGGATAATTTTGTGCTCCACTATGAAATGTTGGAAAAAAGACCTGTTCTG
CCTCAACACTAA

Peptide Sequence

PEP ID

XP_016507057.1
PEP Infomation

PREDICTED: probable NOT transcription complex subunit VIP2 isoform X2 [Nicotiana tabacum]
Sequence

MHGTLGSRNTAINNVPSSGVQQSGNNLSGGRFVPNNLPTALSQISQGNSHAHSGMTSRGG
MSVVGNPGYSSNTNGVGGSIPGILPTSAAIGNRSSVPGLGVSPILGNAGPRMTNSVGNIV
GGGNIGRSISSGAGLSVPGLASRLNMNTNSGSGNLNVQGPNRLMSGVLQQASPQVLSMLG
NSYPAGGPLSQNHVQAIGNFNSMGLLNDVNSNDGSPFDINDFPQLSSRPSSAGGPQGQLG
SLRKQGLSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDPHQKEQLHDNTLSMMQQQHF
SMGRSAGFNLGGTYSSNRPLQQLQHAPSVSSSGVSFSNINNQDLLSLHGSDAFQSSRSSY
QQQGGGPPGIGLRPLNSSGTVSGIGSYDQLIQQYQQHQGQSQFRLQQMSTLGQPFKDQSL
KSMQSQVAPDPFGMLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSAENLYKTFGSPWSD
EPAKGDPEFTVPQCYYAKQPPPLNQAYFSKFQLDTLFYIFYSMPKDEAQLYAANELYNRG
WFYHREHRLWFMRVANMEPLVKTNAYERGSYICFDPNTWETIRKDNFVLHYEMLEKRPVL
PQH

Transcript Sequence

Gene sequence data has not been registered.